Dataset for "Closing the loop in open-source microscopy: Automated focus, scanning, image tiling and resolution calibration on the OpenFlexure Microscope"

1278 71 17177 4 61061 document 17177 tiling_archive.zip application/zip 8a0ea97dcf7cd52f49c4728d8056b65b MD5 10154662827 2023-06-05 16:59:30 https://researchdata.bath.ac.uk/1278/1/tiling_archive.zip 1278 1 1 application/zip other The input images used for the tiling chapter of the associated thesis, excluding the images contributing to blood scan en public cc_by_sa

tiling_archive.zip

data 17178 4 61074 document 17178 resolution.zip application/zip d4f6f771a700bd9a461af2cb57c73c88 MD5 4763854324 2023-06-06 09:35:54 https://researchdata.bath.ac.uk/1278/2/resolution.zip 1278 2 2 application/zip other The images used for the resolution chapter of the associated thesis, split by the objective used en public cc_by_sa

resolution.zip

data 17195 4 61206 document 17195 openflexure-stitching_bd1e0797.zip application/zip af5e6cd9a8c00f518e5dce59c6cecdc5 MD5 305183 2023-06-15 13:36:37 https://researchdata.bath.ac.uk/1278/3/openflexure-stitching_bd1e0797.zip 1278 3 3 application/zip other Tiling and stitching code en public cc_gnu_gpl

openflexure-stitching_bd1e0797.zip

code 17296 4 62005 document 17296 IHI_blood.zip application/zip 550728410c61f6afa8f4812e6c916fed MD5 2384662083 2023-07-21 16:03:03 https://researchdata.bath.ac.uk/1278/4/IHI_blood.zip 1278 4 4 application/zip other Images contributing to blood scan en public cc_by

IHI_blood.zip

2024-07-31 data 17297 2 62057 document 17297 auto_mtf.zip application/zip 7d3df7b456a25cf143c30c2af0e40cb8 MD5 509388 2023-07-24 12:59:08 https://researchdata.bath.ac.uk/1278/5/auto_mtf.zip 1278 5 5 application/zip other Code for collecting LSF images from a USAF resolution target en public cc_gnu_gpl

auto_mtf.zip

code 17299 2 62063 document 17299 micat.zip application/zip 15d6d8463542684e68fbb3ce0f4064a9 MD5 490344 2023-07-24 13:00:41 https://researchdata.bath.ac.uk/1278/6/micat.zip 1278 6 6 application/zip other Code for extracting the LSF from a scan of slanted hard edges en public cc_gnu_gpl

micat.zip

code archive 11016 disk0/00/00/12/78 2024-06-21 09:43:09 2024-06-22 04:52:08 2024-06-21 09:43:09 data_collection show Knapper Joe jak44@bath.ac.uk 0000-0002-5519-1700 University of Bath; University of Glasgow TRUE Dataset for "Closing the loop in open-source microscopy: Automated focus, scanning, image tiling and resolution calibration on the OpenFlexure Microscope" GM0130 KS0120 dept_physics The tiling and stitching code included here corresponds to commit bd1e0797 in the Git repository. The auto_mtf code corresponds to commit 73c62c44. The code for the usafcal extension to Micat corresponds to commit 4b7aeed3. Data for the thesis "Closing the loop in open-source microscopy: Automated focus, scanning, image tiling and resolution calibration on the OpenFlexure Microscope". The dataset consists of two image collections: - a collection of sets of images for tiling and stitching together, used to test the effectiveness of a Python tiling program; - a collection of aligned edge images used to assess the resolution of a microscope. 2023-06-28 University of Bath public https://gitlab.com/openflexure/openflexure-stitching GitLab repository for tiling and stitching code https://gitlab.com/jaknapper/auto_mtf GitLab repository for auto_mtf (collecting LSF images from a USAF resolution target) https://gitlab.com/bath_open_instrumentation_group/micat/-/tree/usafcal-extension?ref_type=heads GitLab branch for usafcal extension to Micat (extracting the LSF from a scan of slanted hard edges) This dataset contains calibration images used to test the performance of a microscope. RightsHolder University of Bath University of Bath https://doi.org/10.13039/501100000835 cent_c3bio The images were all collected automatically on the OpenFlexure Microscope, as described in the respective chapters of the linked thesis, using the included tiling and stitching code and the Bath Open Instrumentation Group's Micat resolution code. Please see the Micat documentation for its technical requirements. The included code requires Python 3.8+ and the packages listed in `requirements.txt`. https://gitlab.com/bath_open_instrumentation_group/micat en 1 10.15125/BATH-01278 open other The set of images contributing to blood scan is under embargo until it has been published separately by data collection researchers at IHI. Dataset