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data archive 6621 disk0/00/00/07/34 2020-03-23 14:36:30 2024-07-15 10:59:18 2020-03-23 14:39:06 data_collection show Collins Joel J.Collins@bath.ac.uk 0000-0002-9382-7511 University of Bath FALSE Knapper Joe jak44@bath.ac.uk 0000-0002-5519-1700 University of Bath FALSE Bowman Richard R.W.Bowman@bath.ac.uk 0000-0002-1531-8199 University of Bath TRUE DataCollector Mduda Joram jmduda@ihi.or.tz Ifakara Health Institute HH0030 dept_chem dept_physics microscopy, open source, instrumentation Additional documentation is provided within the ZIP file. This dataset contains microscopy images collected to demonstrate imaging capabilities of the OpenFlexure Microscope. Images for bright-field transmission and reflection, polarisation contrast, and fluorescence imaging are provided. A set of images obtained from a large tile scan are provided, along with the Microsoft Image Composite Editor file used for tiling. 2020-03-23 University of Bath public RightsHolder University of Bath Engineering and Physical Sciences Research Council https://doi.org/10.13039/501100000266 EP/P029426/1 GCRF - Open Lab Instrumentation Engineering and Physical Sciences Research Council https://doi.org/10.13039/501100000266 EP/R013969/1 Detailed Malaria Diagnostics with Intelligent Microscopy Engineering and Physical Sciences Research Council https://doi.org/10.13039/501100000266 EP/R011443/1 Automated microscopy for high-throughput malaria research. Royal Society https://doi.org/10.13039/501100000288 URF\R1\180153 UR Fellowship - Robotic microscopy for globally accessible science & healthcare Royal Society https://doi.org/10.13039/501100000288 RGF\EA\181034 Robotic microscopy for globally accessible science and healthcare cent_nan cent_photon Images were collected using the OpenFlexure Microscope as documented in the associated mansuscript. Images are in JPEG format. The .spj file is a project file for use with Microsoft Image Composite Editor v2.0 (https://www.microsoft.com/en-us/research/product/computational-photography-applications/image-composite-editor/). Python scripts are written for Python v3.6+ and require non-standard libraries matplotlib, Numpy, opencv-python, picamera, PIL, pytest, scipy, and scikit-image, all of which are available from the Python Package Index (https://pypi.org/). The analysis script `run_analysis.sh` requires a global installation of the Python library micat (https://gitlab.com/bath_open_instrumentation_group/micat). It may be executed directly by a UNIX-like shell, but the command invocation it contains may be used on other platforms. https://doi.org/10.1364/BOE.385729 en 1 10.15125/BATH-00734 https://doi.org/10.1364/BOE.385729 pub open