THIS README IS FOR THE EXTRA DIRECTORY.

THIS DIRECTORY CONTAINS THE CODE AND OUTPUTS FOR ANY ADDITIONAL PLOTS FOR MY THESIS. THERE ARE CURRENTLY TWO R SCRIPTS FOR THIS PURPOSE.

- Ex51Simulation_IwMBMAPlots_final.R: this is the code that runs the INLA within MCMC algorithm for Example 5.1 from the paper "Markov chain Monte Carlo with the Integrated Nested Laplace
Approximation" by Gomez-Rubio and Rue (2018) and also contains the code to generate the plots in Appendix B to illustrate the behaviour of the BMA step of the INLA within MCMC algorithm.

- SBCPlots_final.R: this contains the code to generate the SBC plots in Chapters 2 and 3, which use simulations and samples from the a Normal distribution with varying means and meshes to illustrate the behaviour or divergences (Chapter 2) as well as modelling the rank frequencies and plotting the results accordinly (Chapter 3).