# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:33:47 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -0.0"
 Energy cutoff: -0.00 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            945 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
            639 Rigid clusters.
              1 Rigid clusters larger than size 20.
           7256 Sites in largest rigid cluster.
             11 Sites in second largest rigid cluster.
             21 Stressed Regions.
            450 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:33:49 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -0.5"
 Energy cutoff: -0.500 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            667 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
            845 Rigid clusters.
              1 Rigid clusters larger than size 20.
           6636 Sites in largest rigid cluster.
             11 Sites in second largest rigid cluster.
             23 Stressed Regions.
            556 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:33:50 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -1.0"
 Energy cutoff: -1.00 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            565 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
           1172 Rigid clusters.
             11 Rigid clusters larger than size 20.
           5200 Sites in largest rigid cluster.
             88 Sites in second largest rigid cluster.
             47 Stressed Regions.
            606 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:33:52 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -1.5"
 Energy cutoff: -1.50 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            520 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
           1426 Rigid clusters.
              9 Rigid clusters larger than size 20.
           4492 Sites in largest rigid cluster.
             88 Sites in second largest rigid cluster.
             63 Stressed Regions.
            667 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:34:01 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -0.0"
 Energy cutoff: -0.00 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            945 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
            639 Rigid clusters.
              1 Rigid clusters larger than size 20.
           7256 Sites in largest rigid cluster.
             11 Sites in second largest rigid cluster.
             21 Stressed Regions.
            450 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:34:02 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -0.5"
 Energy cutoff: -0.500 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            667 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
            845 Rigid clusters.
              1 Rigid clusters larger than size 20.
           6636 Sites in largest rigid cluster.
             11 Sites in second largest rigid cluster.
             23 Stressed Regions.
            556 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:34:04 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -1.0"
 Energy cutoff: -1.00 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            565 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
           1172 Rigid clusters.
             11 Rigid clusters larger than size 20.
           5200 Sites in largest rigid cluster.
             88 Sites in second largest rigid cluster.
             47 Stressed Regions.
            606 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:34:05 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -1.5"
 Energy cutoff: -1.50 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            520 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
           1426 Rigid clusters.
              9 Rigid clusters larger than size 20.
           4492 Sites in largest rigid cluster.
             88 Sites in second largest rigid cluster.
             63 Stressed Regions.
            667 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:34:07 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -2.0"
 Energy cutoff: -2.00 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            453 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
           1535 Rigid clusters.
             11 Rigid clusters larger than size 20.
           4061 Sites in largest rigid cluster.
             82 Sites in second largest rigid cluster.
             67 Stressed Regions.
            758 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:34:08 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -2.5"
 Energy cutoff: -2.50 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            397 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
           3020 Rigid clusters.
             20 Rigid clusters larger than size 20.
             82 Sites in largest rigid cluster.
             82 Sites in second largest rigid cluster.
            114 Stressed Regions.
            883 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:34:10 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -3.0"
 Energy cutoff: -3.00 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            345 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
           3048 Rigid clusters.
              8 Rigid clusters larger than size 20.
             82 Sites in largest rigid cluster.
             82 Sites in second largest rigid cluster.
            112 Stressed Regions.
           1041 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:34:11 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -3.5"
 Energy cutoff: -3.50 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            319 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
           3020 Rigid clusters.
              8 Rigid clusters larger than size 20.
             82 Sites in largest rigid cluster.
             82 Sites in second largest rigid cluster.
            112 Stressed Regions.
           1123 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:34:13 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first 6y2e.pdb -non -covin -hbin -phin -srin -E -4.0"
 Energy cutoff: -4.00 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            266 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
           3040 Rigid clusters.
              6 Rigid clusters larger than size 20.
             60 Sites in largest rigid cluster.
             60 Sites in second largest rigid cluster.
            106 Stressed Regions.
           1268 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
# --------------------------------------------------------------------
# FILE INFO:

 Input file name: 6y2e.pdb
 Date: Wed Mar  4 11:45:22 2020

# --------------------------------------------------------------------
# INPUT PARAMETERS:

 Command line: "first -E 0 6y2e.pdb -non -covin -hbin -phin -srin -dil 1"
 Energy cutoff: 0.00 kcal/mol

# --------------------------------------------------------------------
# RESULTS:

           9362 Sites included in the calculation.
              0 Sites excluded in the calculation.
            612 Unique residues found.
              0 Isolated sites.
              0 Isolated dimers.
            945 Hydrogen bonds included.
            326 Hydrophobic tethers included.
              0 Stacked ring interactions included.
            639 Rigid clusters.
              1 Rigid clusters larger than size 20.
           7256 Sites in largest rigid cluster.
             11 Sites in second largest rigid cluster.
             21 Stressed Regions.
            450 Total independent degrees of freedom.

# --------------------------------------------------------------------
# WARNINGS: LEVEL 1 warnings are most severe.

 LEVEL 1 WARNINGS: 0

 LEVEL 2 WARNINGS: 17
* Poor covalent bond length of 1.20014 for hydrogen atom   566 - 561
* Poor covalent bond length of 1.20009 for hydrogen atom   667 - 662
* Poor covalent bond length of 1.20022 for hydrogen atom  1312 - 1307
* Poor covalent bond length of 1.20015 for hydrogen atom  1840 - 1835
* Poor covalent bond length of 1.20021 for hydrogen atom  1990 - 1985
* Poor covalent bond length of 1.20034 for hydrogen atom  2244 - 2239
* Poor covalent bond length of 1.20034 for hydrogen atom  2394 - 2389
* Poor covalent bond length of 1.20017 for hydrogen atom  2452 - 2447
* Poor covalent bond length of 1.20041 for hydrogen atom  4596 - 4591
* Poor covalent bond length of 1.20014 for hydrogen atom  5248 - 5242
* Poor covalent bond length of 1.20009 for hydrogen atom  5349 - 5343
* Poor covalent bond length of 1.20015 for hydrogen atom  6522 - 6516
* Poor covalent bond length of 1.20021 for hydrogen atom  6672 - 6666
* Poor covalent bond length of 1.20034 for hydrogen atom  6926 - 6920
* Poor covalent bond length of 1.20034 for hydrogen atom  7076 - 7070
* Poor covalent bond length of 1.20017 for hydrogen atom  7134 - 7128
* Poor covalent bond length of 1.20041 for hydrogen atom  9278 - 9272

 LEVEL 3 WARNINGS: 0


# --------------------------------------------------------------------
