# Rigid cluster decomposition coloring script for PyMol
#
# Created by Dan Farrell, Brandon Hespenheide.
# Department of Physics and Astronomy
# Biophysics Theory Group
# Arizona State University
############################################################

from pymol import cmd
from pymol.cgo import *

bg_color white
load 6y2e_RCD.pdb

set line_width = 1
color black

color 0x0000b2, ( b > 0.99 and b < 1.01)
color 0x57eb0f, ( b > 1.99 and b < 2.01)
color 0xe75ab7, ( b > 2.99 and b < 3.01)
color 0x23999b, ( b > 3.99 and b < 4.01)
color 0xc19b44, ( b > 4.99 and b < 5.01)
color 0x9e85c8, ( b > 5.99 and b < 6.01)
# Draw hbonds, hydrophoic tethers and stacked rings as distance objects
set dash_gap, 0.1
distance hbonds = id   414 , id   257
distance hbonds = id  5096 , id  4939
distance hbonds = id  8880 , id  8805
distance hbonds = id  4198 , id  4123
distance hbonds = id  7860 , id  7779
distance hbonds = id  3178 , id  3097
distance hbonds = id  7325 , id  7232
distance hbonds = id  2643 , id  2550
distance hbonds = id  6518 , id  6939
distance hbonds = id  1836 , id  2257
distance hbonds = id  2402 , id  1544
distance hbonds = id  7084 , id  6226
distance hbonds = id  8354 , id  8261
distance hbonds = id  3672 , id  3579
distance hbonds = id  1809 , id  2266
distance hbonds = id  6491 , id  6948
distance hbonds = id  9202 , id  9138
distance hbonds = id  4520 , id  4456
distance hbonds = id  2390 , id  2342
distance hbonds = id  7072 , id  7024
distance hbonds = id  7350 , id  7159
distance hbonds = id  2668 , id  2477
distance hbonds = id  4087 , id  4033
distance hbonds = id  8769 , id  8715
distance hbonds = id  2249 , id  2494
distance hbonds = id  6931 , id  7176
distance hbonds = id   592 , id  1305
distance hbonds = id  5274 , id  5987
distance hbonds = id  7759 , id  9091
distance hbonds = id  3077 , id  4409
distance hbonds = id  4578 , id  4504
distance hbonds = id  9260 , id  9186
distance hbonds = id  8607 , id  8547
distance hbonds = id  3925 , id  3865
distance hbonds = id  8495 , id  8428
distance hbonds = id  3813 , id  3746
distance hbonds = id  2039 , id  4413
distance hbonds = id  6721 , id  9095
distance hbonds = id  4592 , id  4516
distance hbonds = id  9274 , id  9198
distance hbonds = id    85 , id  4398
distance hbonds = id  4767 , id  9080
distance hbonds = id  2933 , id  2827
distance hbonds = id  7615 , id  7509
distance hbonds = id  1954 , id  1788
distance hbonds = id  6636 , id  6470
distance hbonds = id  5169 , id  6201
distance hbonds = id   487 , id  1519
distance hbonds = id  5229 , id  5102
distance hbonds = id   547 , id   420
distance hbonds = id  3076 , id  1719
distance hbonds = id  7758 , id  6401
distance hbonds = id  5041 , id  5342
distance hbonds = id   359 , id   660
distance hbonds = id  9043 , id  9019
distance hbonds = id  4361 , id  4337
distance hbonds = id  5500 , id  7525
distance hbonds = id  8977 , id  9017
distance hbonds = id  4295 , id  4335
distance hbonds = id  5192 , id  5145
distance hbonds = id   510 , id   463
distance hbonds = id  6157 , id  4904
distance hbonds = id  1475 , id   222
distance hbonds = id  3155 , id  3081
distance hbonds = id  7837 , id  7763
distance hbonds = id  5244 , id  6014
distance hbonds = id   562 , id  1332
distance hbonds = id  6275 , id  7080
distance hbonds = id  1593 , id  2398
distance hbonds = id  5005 , id  5034
distance hbonds = id   323 , id   352
distance hbonds = id  7819 , id  7749
distance hbonds = id  3137 , id  3067
distance hbonds = id  7884 , id  7808
distance hbonds = id  3202 , id  3126
distance hbonds = id  2637 , id  2107
distance hbonds = id  7319 , id  6789
distance hbonds = id  1280 , id  1316
distance hbonds = id  5962 , id  5998
distance hbonds = id  2671 , id  2678
distance hbonds = id  2283 , id  2456
distance hbonds = id  6965 , id  7138
distance hbonds = id  2649 , id  2528
distance hbonds = id  7331 , id  7210
distance hbonds = id  7353 , id  7360
distance hbonds = id  2314 , id  2414
distance hbonds = id  6996 , id  7096
distance hbonds = id  5751 , id  4955
distance hbonds = id  1069 , id   273
distance hbonds = id  2174 , id  4686
distance hbonds = id  6856 , id     4
distance hbonds = id  6562 , id  5085
distance hbonds = id  1880 , id   403
distance hbonds = id  8735 , id  8668
distance hbonds = id  4053 , id  3986
distance hbonds = id  1720 , id  2004
distance hbonds = id  6402 , id  6686
distance hbonds = id  2533 , id  2647
distance hbonds = id  7215 , id  7329
distance hbonds = id  1320 , id  1274
distance hbonds = id  6002 , id  5956
distance hbonds = id  7874 , id  7798
distance hbonds = id  3192 , id  3116
distance hbonds = id  2782 , id  2445
distance hbonds = id  4536 , id  4470
distance hbonds = id  9218 , id  9152
distance hbonds = id  5107 , id  5220
distance hbonds = id   425 , id   538
distance hbonds = id  4791 , id  1929
distance hbonds = id   109 , id  6611
distance hbonds = id  7913 , id  7851
distance hbonds = id  3231 , id  3169
distance hbonds = id  7164 , id  7346
distance hbonds = id  2482 , id  2664
distance hbonds = id  3102 , id  3037
distance hbonds = id  7784 , id  7719
distance hbonds = id  3581 , id  3510
distance hbonds = id  8263 , id  8192
distance hbonds = id  3911 , id  3858
distance hbonds = id  8593 , id  8540
distance hbonds = id  6447 , id  6665
distance hbonds = id  1765 , id  1983
distance hbonds = id   818 , id  2843
distance hbonds = id  2885 , id   723
distance hbonds = id  7567 , id  5405
distance hbonds = id  8583 , id  8521
distance hbonds = id  3901 , id  3839
distance hbonds = id  7464 , id  7127
distance hbonds = id  6090 , id  5180
distance hbonds = id  1408 , id   498
distance hbonds = id  4162 , id  4082
distance hbonds = id  8844 , id  8764
distance hbonds = id  2233 , id  2186
distance hbonds = id  6915 , id  6868
distance hbonds = id  8217 , id  8147
distance hbonds = id  3535 , id  3465
distance hbonds = id  5890 , id  6074
distance hbonds = id  1208 , id  1392
distance hbonds = id  9238 , id  9166
distance hbonds = id  4556 , id  4484
distance hbonds = id  2009 , id  1726
distance hbonds = id  6691 , id  6408
distance hbonds = id  7553 , id  5422
distance hbonds = id  2871 , id   740
distance hbonds = id  2347 , id  2387
distance hbonds = id  7029 , id  7069
distance hbonds = id   385 , id   290
distance hbonds = id  5067 , id  4972
distance hbonds = id  2433 , id  1587
distance hbonds = id  7115 , id  6269
distance hbonds = id   526 , id  1373
distance hbonds = id  5208 , id  6055
distance hbonds = id  4895 , id  4833
distance hbonds = id   213 , id   151
distance hbonds = id  4509 , id  4459
distance hbonds = id  9191 , id  9141
distance hbonds = id  1249 , id  1351
distance hbonds = id  5931 , id  6033
distance hbonds = id  7937 , id  7872
distance hbonds = id  3255 , id  3190
distance hbonds = id  6840 , id  6635
distance hbonds = id  2158 , id  1953
distance hbonds = id  4107 , id  4050
distance hbonds = id  8789 , id  8732
distance hbonds = id  1240 , id   967
distance hbonds = id  5922 , id  5649
distance hbonds = id  5764 , id  5793
distance hbonds = id  1082 , id  1111
distance hbonds = id  2417 , id  2309
distance hbonds = id  7099 , id  6991
distance hbonds = id  5086 , id  6919
distance hbonds = id   404 , id  2237
distance hbonds = id  6596 , id  6505
distance hbonds = id  1914 , id  1823
distance hbonds = id  3186 , id  3957
distance hbonds = id   125 , id  1779
distance hbonds = id  4807 , id  6461
distance hbonds = id  3594 , id  3530
distance hbonds = id  8276 , id  8212
distance hbonds = id  7868 , id  8639
distance hbonds = id   450 , id   229
distance hbonds = id  5132 , id  4911
distance hbonds = id   468 , id   506
distance hbonds = id  5150 , id  5188
distance hbonds = id  5536 , id  5469
distance hbonds = id   854 , id   787
distance hbonds = id  8996 , id  7952
distance hbonds = id  4314 , id  3270
distance hbonds = id   310 , id  1028
distance hbonds = id  4992 , id  5710
distance hbonds = id  5983 , id  7391
distance hbonds = id  1301 , id  2709
distance hbonds = id  3430 , id  4024
distance hbonds = id  8112 , id  8706
distance hbonds = id  7247 , id  7296
distance hbonds = id  2565 , id  2614
distance hbonds = id  6060 , id  5204
distance hbonds = id  1378 , id   522
distance hbonds = id  6019 , id  5241
distance hbonds = id  1337 , id   559
distance hbonds = id  4961 , id  5745
distance hbonds = id   279 , id  1063
distance hbonds = id  1149 , id  1047
distance hbonds = id  5831 , id  5729
distance hbonds = id  6315 , id  7107
distance hbonds = id  1633 , id  2425
distance hbonds = id  1033 , id   306
distance hbonds = id  5715 , id  4988
distance hbonds = id  1780 , id  2289
distance hbonds = id  6462 , id  6971
distance hbonds = id  6711 , id  6775
distance hbonds = id  2029 , id  2093
distance hbonds = id  4585 , id    44
distance hbonds = id  9267 , id  4726
distance hbonds = id  1784 , id  1971
distance hbonds = id  6466 , id  6653
distance hbonds = id  8372 , id  7686
distance hbonds = id  3690 , id  3004
distance hbonds = id  2501 , id  2255
distance hbonds = id  7183 , id  6937
distance hbonds = id  8200 , id  8133
distance hbonds = id  3518 , id  3451
distance hbonds = id   294 , id   380
distance hbonds = id  4976 , id  5062
distance hbonds = id  6668 , id  6439
distance hbonds = id  1986 , id  1757
distance hbonds = id  6474 , id  6627
distance hbonds = id  1792 , id  1945
distance hbonds = id  3539 , id  3713
distance hbonds = id  8221 , id  8395
distance hbonds = id  8185 , id  8136
distance hbonds = id  3503 , id  3454
distance hbonds = id  6873 , id  6534
distance hbonds = id  2191 , id  1852
distance hbonds = id  1357 , id  1246
distance hbonds = id  6039 , id  5928
distance hbonds = id  6091 , id  5179
distance hbonds = id  1409 , id   497
distance hbonds = id   603 , id  2846
distance hbonds = id  5285 , id  7528
distance hbonds = id  2039 , id  4412
distance hbonds = id  6721 , id  9094
distance hbonds = id    84 , id  4399
distance hbonds = id  4766 , id  9081
distance hbonds = id  4567 , id  4507
distance hbonds = id  9249 , id  9189
distance hbonds = id  4744 , id  4426
distance hbonds = id    62 , id  9108
distance hbonds = id  4118 , id  3502
distance hbonds = id  8800 , id  8184
distance hbonds = id  6719 , id  7664
distance hbonds = id  2037 , id  2982
distance hbonds = id  4746 , id  4425
distance hbonds = id    64 , id  9107
distance hbonds = id    13 , id  7232
distance hbonds = id    86 , id  4425
distance hbonds = id   600 , id  2847
distance hbonds = id  1561 , id  2379
distance hbonds = id  1662 , id  2682
distance hbonds = id  2041 , id  4413
distance hbonds = id  4695 , id  2550
distance hbonds = id  4768 , id  9107
distance hbonds = id  5282 , id  7529
distance hbonds = id  6243 , id  7061
distance hbonds = id  6344 , id  7364
distance hbonds = id  6723 , id  9095
color red, hbonds
hide labels, hbonds
disable hbonds
distance hydrophobics = id    29 , id  4573
distance hydrophobics = id    29 , id  3191
distance hydrophobics = id    30 , id  4441
distance hydrophobics = id    31 , id  4439
distance hydrophobics = id    69 , id  4443
distance hydrophobics = id    94 , id  6631
distance hydrophobics = id   108 , id  1932
distance hydrophobics = id   108 , id  6613
distance hydrophobics = id   118 , id  2295
distance hydrophobics = id   122 , id  4655
distance hydrophobics = id   139 , id  6580
distance hydrophobics = id   170 , id  2401
distance hydrophobics = id   193 , id  2269
distance hydrophobics = id   194 , id  2293
distance hydrophobics = id   230 , id   423
distance hydrophobics = id   231 , id   467
distance hydrophobics = id   242 , id  1835
distance hydrophobics = id   243 , id   423
distance hydrophobics = id   244 , id   400
distance hydrophobics = id   259 , id   440
distance hydrophobics = id   259 , id  1081
distance hydrophobics = id   260 , id  1049
distance hydrophobics = id   260 , id   524
distance hydrophobics = id   322 , id   933
distance hydrophobics = id   322 , id  1013
distance hydrophobics = id   383 , id   628
distance hydrophobics = id   384 , id   626
distance hydrophobics = id   423 , id  2430
distance hydrophobics = id   424 , id   466
distance hydrophobics = id   443 , id  1147
distance hydrophobics = id   443 , id  1467
distance hydrophobics = id   448 , id  1081
distance hydrophobics = id   449 , id  1148
distance hydrophobics = id   464 , id  1571
distance hydrophobics = id   466 , id  1572
distance hydrophobics = id   466 , id  1614
distance hydrophobics = id   466 , id  2431
distance hydrophobics = id   508 , id   543
distance hydrophobics = id   544 , id  1354
distance hydrophobics = id   544 , id  1615
distance hydrophobics = id   561 , id  1333
distance hydrophobics = id   561 , id   627
distance hydrophobics = id   586 , id   806
distance hydrophobics = id   609 , id   726
distance hydrophobics = id   644 , id  1013
distance hydrophobics = id   645 , id   869
distance hydrophobics = id   645 , id   850
distance hydrophobics = id   661 , id   712
distance hydrophobics = id   661 , id   726
distance hydrophobics = id   662 , id   852
distance hydrophobics = id   662 , id   774
distance hydrophobics = id   662 , id   806
distance hydrophobics = id   775 , id   807
distance hydrophobics = id   802 , id  1260
distance hydrophobics = id   872 , id  1258
distance hydrophobics = id  1013 , id  1336
distance hydrophobics = id  1049 , id  1147
distance hydrophobics = id  1050 , id  1190
distance hydrophobics = id  1205 , id  1394
distance hydrophobics = id  1230 , id  1377
distance hydrophobics = id  1307 , id  2751
distance hydrophobics = id  1518 , id  1571
distance hydrophobics = id  1567 , id  2431
distance hydrophobics = id  1572 , id  1614
distance hydrophobics = id  1589 , id  2389
distance hydrophobics = id  1611 , id  2691
distance hydrophobics = id  1614 , id  2692
distance hydrophobics = id  1632 , id  2446
distance hydrophobics = id  1647 , id  2770
distance hydrophobics = id  1672 , id  2446
distance hydrophobics = id  1673 , id  1761
distance hydrophobics = id  1673 , id  2005
distance hydrophobics = id  1758 , id  2447
distance hydrophobics = id  1762 , id  2457
distance hydrophobics = id  1762 , id  1791
distance hydrophobics = id  1764 , id  1985
distance hydrophobics = id  1790 , id  2173
distance hydrophobics = id  1791 , id  1985
distance hydrophobics = id  1806 , id  1835
distance hydrophobics = id  1807 , id  1898
distance hydrophobics = id  1850 , id  2187
distance hydrophobics = id  1898 , id  4821
distance hydrophobics = id  1931 , id  6613
distance hydrophobics = id  1931 , id  4790
distance hydrophobics = id  1949 , id  4776
distance hydrophobics = id  2008 , id  2767
distance hydrophobics = id  2076 , id  2766
distance hydrophobics = id  2095 , id  2814
distance hydrophobics = id  2095 , id  2948
distance hydrophobics = id  2095 , id  2617
distance hydrophobics = id  2109 , id  2631
distance hydrophobics = id  2111 , id  2462
distance hydrophobics = id  2111 , id  2172
distance hydrophobics = id  2170 , id  2631
distance hydrophobics = id  2171 , id  2495
distance hydrophobics = id  2269 , id  2428
distance hydrophobics = id  2290 , id  2400
distance hydrophobics = id  2358 , id  2376
distance hydrophobics = id  2400 , id  2432
distance hydrophobics = id  2426 , id  2694
distance hydrophobics = id  2462 , id  2495
distance hydrophobics = id  2512 , id  2752
distance hydrophobics = id  2512 , id  2530
distance hydrophobics = id  2563 , id  2812
distance hydrophobics = id  2563 , id  2617
distance hydrophobics = id  2648 , id  2811
distance hydrophobics = id  2666 , id  2749
distance hydrophobics = id  2748 , id  2808
distance hydrophobics = id  2814 , id  2948
distance hydrophobics = id  2857 , id  2898
distance hydrophobics = id  2898 , id  2922
distance hydrophobics = id  3006 , id  3084
distance hydrophobics = id  3006 , id  3669
distance hydrophobics = id  3006 , id  4410
distance hydrophobics = id  3039 , id  3516
distance hydrophobics = id  3054 , id  3776
distance hydrophobics = id  3083 , id  4085
distance hydrophobics = id  3084 , id  3669
distance hydrophobics = id  3084 , id  4410
distance hydrophobics = id  3100 , id  3716
distance hydrophobics = id  3100 , id  3842
distance hydrophobics = id  3101 , id  4086
distance hydrophobics = id  3101 , id  4035
distance hydrophobics = id  3117 , id  4519
distance hydrophobics = id  3130 , id  4395
distance hydrophobics = id  3135 , id  4379
distance hydrophobics = id  3135 , id  3154
distance hydrophobics = id  3136 , id  4293
distance hydrophobics = id  3151 , id  4036
distance hydrophobics = id  3171 , id  3880
distance hydrophobics = id  3172 , id  4037
distance hydrophobics = id  3191 , id  4518
distance hydrophobics = id  3201 , id  4293
distance hydrophobics = id  3201 , id  4311
distance hydrophobics = id  3201 , id  3333
distance hydrophobics = id  3212 , id  3961
distance hydrophobics = id  3213 , id  4037
distance hydrophobics = id  3213 , id  3333
distance hydrophobics = id  3228 , id  3938
distance hydrophobics = id  3279 , id  3349
distance hydrophobics = id  3308 , id  3327
distance hydrophobics = id  3310 , id  4292
distance hydrophobics = id  3310 , id  4253
distance hydrophobics = id  3312 , id  4216
distance hydrophobics = id  3312 , id  4142
distance hydrophobics = id  3330 , id  4294
distance hydrophobics = id  3349 , id  3961
distance hydrophobics = id  3366 , id  3406
distance hydrophobics = id  3439 , id  4051
distance hydrophobics = id  3468 , id  3717
distance hydrophobics = id  3513 , id  4051
distance hydrophobics = id  3517 , id  4086
distance hydrophobics = id  3565 , id  3632
distance hydrophobics = id  3566 , id  4104
distance hydrophobics = id  3580 , id  3664
distance hydrophobics = id  3608 , id  3634
distance hydrophobics = id  3668 , id  4161
distance hydrophobics = id  3716 , id  3776
distance hydrophobics = id  3717 , id  4052
distance hydrophobics = id  3823 , id  4471
distance hydrophobics = id  3843 , id  4472
distance hydrophobics = id  3883 , id  4535
distance hydrophobics = id  4161 , id  4378
distance hydrophobics = id  4218 , id  4379
distance hydrophobics = id  4347 , id  9029
distance hydrophobics = id  4396 , id  4440
distance hydrophobics = id  4490 , id  4550
distance hydrophobics = id  4711 , id  9255
distance hydrophobics = id  4711 , id  7873
distance hydrophobics = id  4712 , id  9123
distance hydrophobics = id  4713 , id  9121
distance hydrophobics = id  4751 , id  9125
distance hydrophobics = id  4790 , id  6614
distance hydrophobics = id  4800 , id  6977
distance hydrophobics = id  4804 , id  9337
distance hydrophobics = id  4852 , id  7083
distance hydrophobics = id  4875 , id  6951
distance hydrophobics = id  4876 , id  6975
distance hydrophobics = id  4912 , id  5105
distance hydrophobics = id  4913 , id  5149
distance hydrophobics = id  4924 , id  6517
distance hydrophobics = id  4925 , id  5105
distance hydrophobics = id  4926 , id  5082
distance hydrophobics = id  4941 , id  5763
distance hydrophobics = id  4941 , id  5122
distance hydrophobics = id  4942 , id  5731
distance hydrophobics = id  4942 , id  5206
distance hydrophobics = id  5004 , id  5695
distance hydrophobics = id  5004 , id  5615
distance hydrophobics = id  5065 , id  5310
distance hydrophobics = id  5066 , id  5308
distance hydrophobics = id  5105 , id  7112
distance hydrophobics = id  5106 , id  5148
distance hydrophobics = id  5125 , id  6149
distance hydrophobics = id  5125 , id  5829
distance hydrophobics = id  5130 , id  5763
distance hydrophobics = id  5131 , id  5830
distance hydrophobics = id  5146 , id  6253
distance hydrophobics = id  5148 , id  7113
distance hydrophobics = id  5148 , id  6254
distance hydrophobics = id  5148 , id  6296
distance hydrophobics = id  5190 , id  5225
distance hydrophobics = id  5226 , id  6297
distance hydrophobics = id  5226 , id  6036
distance hydrophobics = id  5243 , id  5309
distance hydrophobics = id  5243 , id  6015
distance hydrophobics = id  5268 , id  5488
distance hydrophobics = id  5291 , id  5408
distance hydrophobics = id  5326 , id  5695
distance hydrophobics = id  5327 , id  5551
distance hydrophobics = id  5327 , id  5532
distance hydrophobics = id  5343 , id  5408
distance hydrophobics = id  5343 , id  5394
distance hydrophobics = id  5344 , id  5488
distance hydrophobics = id  5344 , id  5534
distance hydrophobics = id  5344 , id  5456
distance hydrophobics = id  5457 , id  5489
distance hydrophobics = id  5484 , id  5942
distance hydrophobics = id  5554 , id  5940
distance hydrophobics = id  5695 , id  6018
distance hydrophobics = id  5731 , id  5829
distance hydrophobics = id  5732 , id  5872
distance hydrophobics = id  5887 , id  6076
distance hydrophobics = id  5912 , id  6059
distance hydrophobics = id  5989 , id  7433
distance hydrophobics = id  6200 , id  6253
distance hydrophobics = id  6249 , id  7113
distance hydrophobics = id  6254 , id  6296
distance hydrophobics = id  6271 , id  7071
distance hydrophobics = id  6293 , id  7373
distance hydrophobics = id  6296 , id  7374
distance hydrophobics = id  6314 , id  7128
distance hydrophobics = id  6329 , id  7452
distance hydrophobics = id  6354 , id  7128
distance hydrophobics = id  6355 , id  6443
distance hydrophobics = id  6355 , id  6687
distance hydrophobics = id  6440 , id  7129
distance hydrophobics = id  6444 , id  6473
distance hydrophobics = id  6444 , id  7139
distance hydrophobics = id  6446 , id  6667
distance hydrophobics = id  6472 , id  6855
distance hydrophobics = id  6473 , id  6667
distance hydrophobics = id  6488 , id  6517
distance hydrophobics = id  6489 , id  6580
distance hydrophobics = id  6532 , id  6869
distance hydrophobics = id  6690 , id  7449
distance hydrophobics = id  6758 , id  7448
distance hydrophobics = id  6777 , id  7299
distance hydrophobics = id  6777 , id  7496
distance hydrophobics = id  6777 , id  7630
distance hydrophobics = id  6791 , id  7313
distance hydrophobics = id  6793 , id  6854
distance hydrophobics = id  6793 , id  7144
distance hydrophobics = id  6852 , id  7313
distance hydrophobics = id  6853 , id  7177
distance hydrophobics = id  6951 , id  7110
distance hydrophobics = id  6972 , id  7082
distance hydrophobics = id  7040 , id  7058
distance hydrophobics = id  7082 , id  7114
distance hydrophobics = id  7108 , id  7376
distance hydrophobics = id  7144 , id  7177
distance hydrophobics = id  7194 , id  7212
distance hydrophobics = id  7194 , id  7434
distance hydrophobics = id  7245 , id  7299
distance hydrophobics = id  7245 , id  7494
distance hydrophobics = id  7330 , id  7493
distance hydrophobics = id  7348 , id  7431
distance hydrophobics = id  7430 , id  7490
distance hydrophobics = id  7496 , id  7630
distance hydrophobics = id  7539 , id  7580
distance hydrophobics = id  7580 , id  7604
distance hydrophobics = id  7688 , id  7766
distance hydrophobics = id  7688 , id  9092
distance hydrophobics = id  7688 , id  8351
distance hydrophobics = id  7721 , id  8198
distance hydrophobics = id  7736 , id  8458
distance hydrophobics = id  7765 , id  8767
distance hydrophobics = id  7766 , id  9092
distance hydrophobics = id  7766 , id  8351
distance hydrophobics = id  7782 , id  8524
distance hydrophobics = id  7782 , id  8398
distance hydrophobics = id  7783 , id  8717
distance hydrophobics = id  7783 , id  8768
distance hydrophobics = id  7799 , id  9201
distance hydrophobics = id  7812 , id  9077
distance hydrophobics = id  7817 , id  7836
distance hydrophobics = id  7817 , id  9061
distance hydrophobics = id  7818 , id  8975
distance hydrophobics = id  7833 , id  8718
distance hydrophobics = id  7853 , id  8562
distance hydrophobics = id  7854 , id  8719
distance hydrophobics = id  7873 , id  9200
distance hydrophobics = id  7883 , id  8993
distance hydrophobics = id  7883 , id  8975
distance hydrophobics = id  7883 , id  8015
distance hydrophobics = id  7894 , id  8643
distance hydrophobics = id  7895 , id  8015
distance hydrophobics = id  7895 , id  8719
distance hydrophobics = id  7910 , id  8620
distance hydrophobics = id  7961 , id  8031
distance hydrophobics = id  7990 , id  8009
distance hydrophobics = id  7992 , id  8974
distance hydrophobics = id  7992 , id  8935
distance hydrophobics = id  7994 , id  8898
distance hydrophobics = id  7994 , id  8824
distance hydrophobics = id  8012 , id  8976
distance hydrophobics = id  8031 , id  8643
distance hydrophobics = id  8048 , id  8088
distance hydrophobics = id  8121 , id  8733
distance hydrophobics = id  8150 , id  8399
distance hydrophobics = id  8195 , id  8733
distance hydrophobics = id  8199 , id  8768
distance hydrophobics = id  8247 , id  8314
distance hydrophobics = id  8248 , id  8786
distance hydrophobics = id  8262 , id  8346
distance hydrophobics = id  8290 , id  8316
distance hydrophobics = id  8350 , id  8843
distance hydrophobics = id  8398 , id  8458
distance hydrophobics = id  8399 , id  8734
distance hydrophobics = id  8505 , id  9153
distance hydrophobics = id  8525 , id  9154
distance hydrophobics = id  8565 , id  9217
distance hydrophobics = id  8843 , id  9060
distance hydrophobics = id  8900 , id  9061
distance hydrophobics = id  9078 , id  9122
distance hydrophobics = id  9172 , id  9232
color green, hydrophobics
hide labels, hydrophobics
disable hydrophobics
# Rigid Cluster 1 has 60 atoms.
create RC1, ( b > 0.99 and b < 1.01)
show sticks, RC1
set line_width = 3, RC1
color 0x0000b2, RC1

# Rigid Cluster 2 has 60 atoms.
create RC2, ( b > 1.99 and b < 2.01)
show sticks, RC2
set line_width = 3, RC2
color 0x57eb0f, RC2

# Rigid Cluster 3 has 43 atoms.
create RC3, ( b > 2.99 and b < 3.01)
show sticks, RC3
set line_width = 3, RC3
color 0xe75ab7, RC3

# Rigid Cluster 4 has 43 atoms.
create RC4, ( b > 3.99 and b < 4.01)
show sticks, RC4
set line_width = 3, RC4
color 0x23999b, RC4

# Rigid Cluster 5 has 43 atoms.
create RC5, ( b > 4.99 and b < 5.01)
show sticks, RC5
set line_width = 3, RC5
color 0xc19b44, RC5

# Rigid Cluster 6 has 43 atoms.
create RC6, ( b > 5.99 and b < 6.01)
show sticks, RC6
set line_width = 3, RC6
color 0x9e85c8, RC6

# Rigid Cluster BIN2
create BIN2, ( b > 6.99 and b < 75.01)
show sticks, BIN2
set line_width = 3, BIN2
color gray, BIN2
disable BIN2

# Rigid Cluster BIN1
create BIN1, ( b > 75.99 and b < 999.00 )
show sticks, BIN1
set line_width = 3, BIN1
color gray, BIN1
disable BIN1

